Reconciliation of Challan Payments made to Bank for TDS accounts is done in TDS Challan reconciliation report.
Go to Gateway of Tally > Display > Statutory Reports > TDS Reports > Challan Reconciliation
The Challan Reconciliation report appears as shown
To reconcile the TDS challans press F5 or click on the F5: Challan Reconcile button in the buttons bar
Enter the E-TDS Quarter from and To Date, Cheque/DD No., Cheque/DD Date, Name of Bank, BSR Code, Challan No. and Challan Date OR use Set Challan Details (Alt +S) button from the buttons bar to reconcile challans from the TDS Challan Reconciliation screen.
Enter the Cheque/DD No., Cheque/DD Date and accept to Save the details.